Synapse
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About
Synapse is a cloud-based platform developed by Sage Bionetworks to facilitate collaboration in biomedical research. It allows researchers to share and manage data, metadata, analyses, tools, and other research outputs. It offers various features for organizing data, including projects, files, folders, tables, wikis, and datasets. Synapse provides programmatic APIs for integration with other tools and workflows and supports various access control mechanisms to manage data privacy and security. Different service plans cater to various needs and storage requirements.
Platform
Task
Features
• collaboration tools
• api access
• cloud storage integration
• data repository
• wiki pages
• doi minting
• metadata management
• sharing platform
FAQs
What does Synapse do?
Synapse is a cloud-based platform for sharing and analyzing health and disease data. It facilitates collaboration and provides tools for managing, describing, and accessing content.
Is Synapse a data analysis platform?
No, Synapse is primarily a data management and sharing platform. It integrates with analytical tools and cloud computing resources to support analysis.
Who uses Synapse?
Anyone 18+ can create an account. Different plans have varying access and content limitations.
Can I get help using Synapse?
Use the Discussion Forum to connect with the Synapse community. Support access depends on your plan.
Is Synapse open source?
Yes, Synapse's source code is available under the Apache 2.0 License on GitHub.
Is there API documentation?
Yes, Synapse has a RESTful API with documentation, including an OpenAPI Specification, and clients for Python, R, and Java.
How do I set up my own instance of Synapse?
Synapse is primarily SaaS; however, it supports private projects and referencing externally stored data.
What do I do if I find a bug?
Report bugs through Sage Bionetworks' Jira tracker.
How do I get started?
See the Getting Started guide. Registration is required for most features.
Why should I register for a Synapse account?
Account registration is needed for uploading content, downloading restricted files, and accessing advanced features.
What is a validated profile?
Profile validation establishes your identity using profile information, ORCID, and an external credential. It's needed for accessing some content.
How do I find content my colleague shared?
For private content, ensure it's shared with you. Public data is searchable via the Synapse interface.
How do I find public datasets in Synapse?
Browse Synapse's Research Communities and public resources pages.
I'm ready to share data, how do I start?
Synapse facilitates sharing; use the upload and organization guides.
Why do I have to be a certified user to upload content?
Certification requires understanding responsibilities for sharing, especially human participant data; involves a quiz.
Pricing Plans
Self-Managed Plan
Unknown Price• Up to 100GB or 500GB storage
• Consulting services
• Help desk support
• Access request tools
Data Coordination Plan
Unknown Price• Customized consulting and data curation
• Data policy localization
• Custom data portal
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